Actually Minhag HaGra does not pertain in all of EY nor is it 100% even in Yerushalayim (except for the Zilberman kehila). For example, in the Galil the cohanim only duchan in Musaf on Shabbat andyamim tovim (Minhag HaGra is every day). Even in Yerushalayim almost everyone says “v’ne’emar” at the end of Aleinu (the Gra did not say it).
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