Let me emphasize that going to Touro is NOT a less respected degree. My experience in applying to schools on the doctoral level has been that I am not at a disadvantage.
HOWEVER, Touro is very much what you make of it. If you are self-motivated, you can receive an excellent education and a great deal of personal attention. Do your research, find out who is in your field, and whose politics you agree with. For some reason, my equally motivated friends in Stern did not easily develop close relationships to the professors they admired. In Touro, it may be easier to stand out and this is important if you intend to go to graduate school and rise in your field.
For a yeshivish / chasidish person I would recommend Touro, because it is thousands of dollars cheaper and you can receive a comparable education. The degree is just as good as YU’s and in some areas better. Socially you will find easily find friends who equally want to avoid the morally repugnant aspects of college life.
For a more modern person or someone who wants to be a little less frum and can afford it, I would recommend YU as you will be less comfortable in Touro. Touro students are from poorer, frummer families, overall.
Again, you will find all types in both colleges. However, they are currently equally good degrees and you should do what is best for you.