The “hatred” between Jews and Muslims is largely a function of the “real estate” dispute in the Middle East. Note the during the pre-zionist period, roughly 700-1914, Jews in most Muslim countries tended to regard themselves as better off than Jews in Europe, and rarely were inclined to flee unless they were conquered by Christians, whereas European Jews were in a state of constant turmoil due to annoying goyim. While Jews were second class citizens in Muslim countries (similar to African Americans in the “Jim Crow” era), that was a lot better than the frequent genocide in Europe.
Most Muslims come to America with the hope of being free of the constraints of living in an Islamic country. While the current wars in the Middle East are a problem, in all fairness America is treating them better than Germans (especially in World War I) and Japanese (during World War II) were treated in America.